{ "_id": "6a55f2fdff0138dec5d6ad64", "Package": "survivalmodels", "Title": "Models for Survival Analysis", "Version": "0.1.191", "Authors@R": "c(person(given = \"Raphael\",\nfamily = \"Sonabend\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0001-9225-4654\")),\nperson(given = \"Yohann\",\nfamily = \"Foucher\",\nrole = c(\"cre\"),\nemail = \"yohann.foucher@univ-poitiers.fr\",\ncomment = c(ORCID = \"0000-0003-0330-7457\")))", "Description": "Implementations of classical and machine learning models\nfor survival analysis, including deep neural networks via\n'keras' and 'tensorflow'. Each model includes a separated fit\nand predict interface with consistent prediction types for\npredicting risk or survival probabilities. Models are either\nimplemented from 'Python' via 'reticulate'\n, from code in\nGitHub packages, or novel implementations using 'Rcpp'\n. Neural networks are\nimplemented from the 'Python' package 'pycox'\n.", "License": "MIT + file LICENSE", "URL": "https://github.com/RaphaelS1/survivalmodels/", "BugReports": "https://github.com/foucher-y/survivalmodels/issues", "Encoding": "UTF-8", "Repository": "https://foucher-y.r-universe.dev", "Date/Publication": "2024-03-18 21:11:45 UTC", "RemoteUrl": "https://github.com/foucher-y/survivalmodels", "RemoteRef": "HEAD", "RemoteSha": "dd1db0ca588613794373ab74432e4c1420c05255", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-07-14 08:22:48 UTC", "User": "root" }, "Author": "Raphael Sonabend [aut] (ORCID: ),\nYohann Foucher [cre] (ORCID: )", "Maintainer": "Yohann Foucher ", "_user": "foucher-y", "_type": "src", "_file": "survivalmodels_0.1.191.tar.gz", "_fileid": "https://r2.ropensci.org/a2d30b26656a1034af1d593ca03a604a6b88dfabad5a5253b5fc80a3f9cb8280", "_filesize": 193728, "_sha256": "a2d30b26656a1034af1d593ca03a604a6b88dfabad5a5253b5fc80a3f9cb8280", "_expires": "2026-10-22T08:27:39.000Z", "_created": "2026-07-14T08:22:48.000Z", "_published": "2026-07-14T08:27:40.923Z", "_jobs": [ { "job": 87035823244, "time": 159, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "8304700959" }, { "job": 87035823307, "time": 128, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "8304689508" }, { "job": 87035823256, "time": 176, "config": "linux-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "8304707488" }, { "job": 87035823245, "time": 135, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "8304691478" }, { "job": 87035823233, "time": 80, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "8304672147" }, { "job": 87035823265, "time": 194, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "8304712870" }, { "job": 87035823267, "time": 87, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "8304674517" }, { "job": 87035823217, "time": 251, "config": "macos-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "8304733696" }, { "job": 87035145791, "time": 215, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8304642921" }, { "job": 87035823282, "time": 108, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8304682135" }, { "job": 87035823241, "time": 108, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "8304682488" }, { "job": 87035823281, "time": 94, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "8304677114" }, { "job": 87035823275, "time": 89, "config": "windows-release", "r": "4.6.1", "check": "OK", "artifact": "8304675142" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/foucher-y/actions/runs/29317588485", "_status": "success", "_upstream": "https://github.com/foucher-y/survivalmodels", "_commit": { "id": "dd1db0ca588613794373ab74432e4c1420c05255", "author": "foucher-y ", "committer": "foucher-y ", "message": "2024.03.18\n", "time": 1710796305 }, "_maintainer": { "name": "Yohann Foucher", "email": "yohann.foucher@univ-poitiers.fr", "login": "foucher-y", "linkedin": "in/yohann-foucher", "orcid": "0000-0003-0330-7457", "description": "Professor in Biostatistics", "uuid": 153531453 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "Rcpp", "role": "LinkingTo" }, { "package": "Rcpp", "version": ">= 1.0.5", "role": "Imports" }, { "package": "keras", "version": ">= 2.11.0", "role": "Suggests" }, { "package": "pseudo", "role": "Suggests" }, { "package": "reticulate", "role": "Suggests" }, { "package": "survival", "role": "Suggests" } ], "_owner": "foucher-y", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 1, "_contributors": [ { "user": "raphaels1", "count": 122, "uuid": 25639974 }, { "user": "bblodfon", "count": 9, "uuid": 10909555 }, { "user": "foucher-y", "count": 3, "uuid": 153531453 }, { "user": "web-flow", "count": 2, "uuid": 19864447 } ], "_userbio": { "uuid": 153531453, "type": "user", "name": "Yohann Foucher", "followers": 15, "description": "Professor in Biostatistics" }, "_downloads": { "count": 538, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/survivalmodels" }, "_devurl": "https://github.com/foucher-y/survivalmodels", "_searchresults": 72, "_topics": [ "cpp" ], "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/readme.html", "extra/readme.md", "extra/survivalmodels.html", "LICENSE", "manual.pdf" ], "_homeurl": "https://github.com/foucher-y/survivalmodels", "_realowner": "foucher-y", "_cranurl": true, "_releases": [ { "version": "0.1.0", "date": "2020-10-15" }, { "version": "0.1.1", "date": "2020-10-20" }, { "version": "0.1.2", "date": "2020-11-03" }, { "version": "0.1.3", "date": "2020-11-11" }, { "version": "0.1.4", "date": "2020-11-18" }, { "version": "0.1.5", "date": "2021-01-17" }, { "version": "0.1.6", "date": "2021-02-09" }, { "version": "0.1.7", "date": "2021-03-09" }, { "version": "0.1.8", "date": "2021-04-17" }, { "version": "0.1.9", "date": "2021-09-12" }, { "version": "0.1.11", "date": "2022-02-16" }, { "version": "0.1.12", "date": "2022-03-11" }, { "version": "0.1.13", "date": "2022-03-24" }, { "version": "0.1.191", "date": "2024-03-19" } ], "_exports": [ "build_keras_net", "build_pytorch_net", "cindex", "coxtime", "deephit", "deepsurv", "get_keras_optimizer", "get_pycox_activation", "get_pycox_callbacks", "get_pycox_init", "get_pycox_optim", "install_keras", "install_pycox", "install_torch", "loghaz", "pchazard", "pycox_prepare_train_data", "requireNamespaces", "set_seed", "simsurvdata", "surv_to_risk" ], "_help": [ { "page": "survivalmodels-package", "title": "survivalmodels: Models for Survival Analysis", "topics": [ "survivalmodels-package", "survivalmodels" ] }, { "page": "build_keras_net", "title": "Build a Keras Multilayer Perceptron", "topics": [ "build_keras_net" ] }, { "page": "build_pytorch_net", "title": "Build a Pytorch Multilayer Perceptron", "topics": [ "build_pytorch_net" ] }, { "page": "cindex", "title": "Compute Concordance of survivalmodel Risk", "topics": [ "cindex" ] }, { "page": "coxtime", "title": "Cox-Time Survival Neural Network", "topics": [ "coxtime" ] }, { "page": "deephit", "title": "DeepHit Survival Neural Network", "topics": [ "deephit" ] }, { "page": "deepsurv", "title": "DeepSurv Survival Neural Network", "topics": [ "deepsurv" ] }, { "page": "get_keras_optimizer", "title": "Get Keras Optimizer", "topics": [ "get_keras_optimizer" ] }, { "page": "get_pycox_activation", "title": "Get Pytorch Activation Function", "topics": [ "get_pycox_activation" ] }, { "page": "get_pycox_callbacks", "title": "Get Torchtuples Callbacks", "topics": [ "get_pycox_callbacks" ] }, { "page": "get_pycox_init", "title": "Get Pytorch Weight Initialization Method", "topics": [ "get_pycox_init" ] }, { "page": "get_pycox_optim", "title": "Get Pytorch Optimizer", "topics": [ "get_pycox_optim" ] }, { "page": "install_keras", "title": "Install Keras and Tensorflow", "topics": [ "install_keras" ] }, { "page": "install_pycox", "title": "Install Pycox With Reticulate", "topics": [ "install_pycox" ] }, { "page": "install_torch", "title": "Install Torch With Reticulate", "topics": [ "install_torch" ] }, { "page": "loghaz", "title": "Logistic-Hazard Survival Neural Network", "topics": [ "loghaz" ] }, { "page": "pchazard", "title": "PC-Hazard Survival Neural Network", "topics": [ "pchazard" ] }, { "page": "predict.pycox", "title": "Predict Method for pycox Neural Networks", "topics": [ "predict.pycox" ] }, { "page": "pycox_prepare_train_data", "title": "Prepare Data for Pycox Model Training", "topics": [ "pycox_prepare_train_data" ] }, { "page": "requireNamespaces", "title": "Vectorised Logical requireNamespace", "topics": [ "requireNamespaces" ] }, { "page": "set_seed", "title": "Set seed in R numpy and torch", "topics": [ "set_seed" ] }, { "page": "simsurvdata", "title": "Simulate Survival Data", "topics": [ "simsurvdata" ] }, { "page": "surv_to_risk", "title": "Safely convert a survival matrix prediction to a relative risk", "topics": [ "surv_to_risk" ] } ], "_readme": "https://github.com/foucher-y/survivalmodels/raw/HEAD/README.md", "_rundeps": [ "Rcpp" ], "_sysdeps": [ { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "16-20260322-1ubuntu1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_score": 4.03342375548695, "_indexed": true, "_nocasepkg": "survivalmodels", "_universes": [ "foucher-y" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.191", "date": "2026-07-14T08:25:36.000Z", "distro": "resolute", "arch": "aarch64", "commit": "dd1db0ca588613794373ab74432e4c1420c05255", "fileid": "https://r2.ropensci.org/b73af961bb3f86a3e77134f32f7b8c738d9e2feb3af68e4a5c0df41bb7517747", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/foucher-y/actions/runs/29317588485" }, { "r": "4.7.0", "os": "linux", "version": "0.1.191", "date": "2026-07-14T08:24:58.000Z", "distro": "resolute", "arch": "x86_64", "commit": "dd1db0ca588613794373ab74432e4c1420c05255", "fileid": "https://r2.ropensci.org/b661ec10faf7d5ebfeb23eb025da8bd572938ef7154411e6cfaf37f4e4355ffc", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/foucher-y/actions/runs/29317588485" }, { "r": "4.6.1", "os": "linux", "version": "0.1.191", "date": "2026-07-14T08:25:53.000Z", "distro": "resolute", "arch": "aarch64", "commit": "dd1db0ca588613794373ab74432e4c1420c05255", "fileid": "https://r2.ropensci.org/c0d4ba97e2ada28e13049dba9485fb69fee77506df1ac6c10e28ec547e32253c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/foucher-y/actions/runs/29317588485" }, { "r": "4.6.1", "os": "linux", "version": "0.1.191", "date": "2026-07-14T08:25:04.000Z", "distro": "resolute", "arch": "x86_64", "commit": "dd1db0ca588613794373ab74432e4c1420c05255", "fileid": "https://r2.ropensci.org/b2b84f180950d13efe0c4ee75cdfc0968114933ba5e60c10e25eec94c928fa6a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/foucher-y/actions/runs/29317588485" }, { "r": "4.5.3", "os": "mac", "version": "0.1.191", "date": "2026-07-14T08:24:14.000Z", "arch": "aarch64", "commit": "dd1db0ca588613794373ab74432e4c1420c05255", "fileid": "https://r2.ropensci.org/a8f974204c389fe04b25bb2cb62c5a46054008cbe99748ba815e8e72303c39e4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/foucher-y/actions/runs/29317588485" }, { "r": "4.5.3", "os": "mac", "version": "0.1.191", "date": "2026-07-14T08:25:45.000Z", "arch": "x86_64", "commit": "dd1db0ca588613794373ab74432e4c1420c05255", "fileid": "https://r2.ropensci.org/1214709685f0954b5a0f3fa1c651fd1f1a59cef25bea79ef20582f0175a37da5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/foucher-y/actions/runs/29317588485" }, { "r": "4.6.1", "os": "mac", "version": "0.1.191", "date": "2026-07-14T08:24:13.000Z", "arch": "aarch64", "commit": "dd1db0ca588613794373ab74432e4c1420c05255", "fileid": "https://r2.ropensci.org/fc9156739cfdf99826d393203827e8ea6bda014867220ac139a0055ee629bc6c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/foucher-y/actions/runs/29317588485" }, { "r": "4.6.1", "os": "mac", "version": "0.1.191", "date": "2026-07-14T08:26:28.000Z", "arch": "x86_64", "commit": "dd1db0ca588613794373ab74432e4c1420c05255", "fileid": "https://r2.ropensci.org/58cdcb280f6f4722ab1930eca6e8ce0c5bea95a1db3e2690524260220372d6ae", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/foucher-y/actions/runs/29317588485" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.191", "date": "2026-07-14T08:24:50.000Z", "arch": "emscripten", "commit": "dd1db0ca588613794373ab74432e4c1420c05255", "fileid": "https://r2.ropensci.org/f4d4863d5bd5941b954db91468a6dac633b545af62e23b5cb1d259876c1545f8", "status": "success", "buildurl": "https://github.com/r-universe/foucher-y/actions/runs/29317588485" }, { "r": "4.7.0", "os": "win", "version": "0.1.191", "date": "2026-07-14T08:24:20.000Z", "arch": "x86_64", "commit": "dd1db0ca588613794373ab74432e4c1420c05255", "fileid": "https://r2.ropensci.org/fe6ee18243c644732ed30829357d810f1fd1c6d50f06c359fb661c5ca8e38f1b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/foucher-y/actions/runs/29317588485" }, { "r": "4.5.3", "os": "win", "version": "0.1.191", "date": "2026-07-14T08:23:57.000Z", "arch": "x86_64", "commit": "dd1db0ca588613794373ab74432e4c1420c05255", "fileid": "https://r2.ropensci.org/a1733a830487e99aa21e409fb1e2f2b51ac2e274ac6f1631b9d0913bcba49c60", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/foucher-y/actions/runs/29317588485" }, { "r": "4.6.1", "os": "win", "version": "0.1.191", "date": "2026-07-14T08:23:56.000Z", "arch": "x86_64", "commit": "dd1db0ca588613794373ab74432e4c1420c05255", "fileid": "https://r2.ropensci.org/db762bd2d1e24e64ce97ca5dcfd135e7e42c9d6593999c788ae021ad8803e234", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/foucher-y/actions/runs/29317588485" } ] }