Package: RISCA 1.0.5
RISCA: Causal Inference and Prediction in Cohort-Based Analyses
Numerous functions for cohort-based analyses, either for prediction or causal inference. For causal inference, it includes Inverse Probability Weighting and G-computation for marginal estimation of an exposure effect when confounders are expected. We deal with binary outcomes, times-to-events, competing events, and multi-state data. For multistate data, semi-Markov model with interval censoring may be considered, and we propose the possibility to consider the excess of mortality related to the disease compared to reference lifetime tables. For predictive studies, we propose a set of functions to estimate time-dependent receiver operating characteristic (ROC) curves with the possible consideration of right-censoring times-to-events or the presence of confounders. Finally, several functions are available to assess time-dependent ROC curves or survival curves from aggregated data.
Authors:
RISCA_1.0.5.tar.gz
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RISCA.pdf |RISCA.html✨
RISCA/json (API)
# Install 'RISCA' in R: |
install.packages('RISCA', repos = c('https://foucher-y.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/foucher-y/risca/issues
- dataCSL - CSL Liver Chirrosis Data.
- dataDIVAT1 - A First Sample From The DIVAT Data Bank.
- dataDIVAT2 - A Second Sample From the DIVAT Data Bank.
- dataDIVAT3 - A Third Sample From the DIVAT Data Bank.
- dataDIVAT4 - A Fourth Sample From the DIVAT Data Bank.
- dataDIVAT5 - The Aggregated Kidney Graft Survival Stratified By The 1-year Serum Creatinine.
- dataFTR - Data for First Kidney Transplant Recipients.
- dataHepatology - The Data Extracted From The Meta-Analysis By Cabibbo et al. (2010).
- dataKTFS - A Sixth Sample Of The DIVAT Cohort.
- dataKi67 - The Aggregated Data Published By de Azambuja et al. (2007).
- dataOFSEP - A Simulated Sample From the OFSEP Cohort.
- dataSTR - Data for Second Kidney Transplant Recipients.
- fr.ratetable - Expected Mortality Rates of the General French Population
Last updated 8 months agofrom:b17b78ab87. Checks:OK: 1 WARNING: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 08 2024 |
R-4.5-win | WARNING | Nov 08 2024 |
R-4.5-linux | WARNING | Nov 08 2024 |
R-4.4-win | WARNING | Nov 08 2024 |
R-4.4-mac | WARNING | Nov 08 2024 |
R-4.3-win | WARNING | Nov 08 2024 |
R-4.3-mac | WARNING | Nov 08 2024 |
Exports:aucexpect.utility1expect.utility2gc.logisticgc.sl.binarygc.survivalipw.log.rankipw.survivallrs.multistatemarkov.3statesmarkov.3states.rsaddmarkov.4statesmarkov.4states.rsaddmixture.2statesportpred.mixture.2statesrmstroc.binaryroc.netroc.prognostic.aggregateroc.prognostic.individualroc.summaryroc.timesemi.markov.3statessemi.markov.3states.icsemi.markov.3states.rsaddsemi.markov.4statessemi.markov.4states.rsaddsurvival.mrsurvival.summarysurvival.summary.strata
Dependencies:backportsbase64encbitbit64bitopsbslibcachemcaretcaToolscheckmateclassclicliprclockclustercmprskcodetoolscolorspacecpp11crayoncubaturecvAUCdata.tabledatediagramdialsDiceDesigndigestdoFuturedoParalleldplyre1071evaluatefansifarverfastmapfontawesomeforcatsforeachforeignFormulafsfurrrfuturefuture.applygamgenericsggformulaggplot2ggridgesglmnetglobalsgluegowerGPfitgplotsgridExtragtablegtoolshardhathavenherehighrHmischmshtmlTablehtmltoolshtmlwidgetsipredisobanditeratorsjquerylibjsonlitekernlabKernSmoothknitrlabelinglabelledlatticelavalazyevallhslifecyclelistenvlubridatemagrittrMASSMatrixMatrixModelsmemoisemetsmgcvmimemodelenvModelMetricsmosaicmosaicCoremosaicDatamultcompmunsellmvtnormnlmennetnnlsnumDerivpammtoolsparallellyparsnippecpillarpkgconfigplotrixplyrpngpolsplineprettyunitspROCprodlimprogressprogressrproxyPublishpurrrquantregR6rangerrappdirsRColorBrewerRcppRcppArmadilloRcppEigenRcppTOMLreadrrecipesrelsurvreshape2reticulateriskRegressionrlangrmarkdownrmsROCRrpartrprojrootrsamplerstudioapisandwichsassscalessfdshapesliderSparseMSQUAREMstatmodstringistringrSuperLearnersurvivalTH.datatibbletidyrtidyselecttimechangetimeDatetimeregtinytextunetzdbutf8vctrsviridisviridisLitevroomwarpwithrworkflowsxfunyamlyardstickzoo